ZHOU LABORATORY Protein Drug Design and Molecular Diagnostics
Table of Contents
RNA Temperature adaptation
RNAsnap: RNA solvent accessibility prediction from sequence
SPARKS-x: Fold Recognition
SPOT-Contact: Sequence-based contact map prediction
SPOT-1D: Latest method On sequence-based prediction of structural features for proteins
SPIDER3-Single (Numpy): Single-sequence-based prediction of structural features for proteins
SPOT-Disorder2: Sequence-based prediction of intrinsically disordered proteins: V2.0
SPOT-Disorder-Single: Single sequence-based prediction of intrinsically disordered proteins
SPOT-Contact-LM: Improving single-sequence-based prediction of protein contact map using a transformer language model
SPIDER3: Sequence-based prediction of structural features for proteins
SPOT-Disorder: Sequence-based prediction of intrinsically disordered proteins
SPIDER2: Predicting secondary structure, local backbone angles, and ASA of proteins
SPINE-D: Protein disorder prediction
SPIDER-HSE: HSE (alpha/beta) prediction from protein sequence
SPIDER2 (including HSE): Predicting secondary structure, local backbone angles, ASA, and [HSE] of proteins
SPINE-X: Protein secondary Structure Prediction
dDFIRE: Calculating Conformational Free Energy
DFIRE2 source code
DFIRE2 executable
DFIRE-RNA source code (Github)
SPalign: Structure Alignment Program (source code)
SPalignNS: Non-sequential Structure Alignment Program (source code)
DDNA3: Protein-DNA interaction energy
SPOT-Struct-RNA: RNA protein prediction from Structure
SPOT-Seq-RNA: RNA protein prediction from Sequence
SPOT-MoRF: MoRF prediction by transfer learning